Oat and Oct distribution in renal tissues
Oligonucleotide probes generated for analysis of Oat and Oct expression by bDNA signal amplification. Target refers to the sequence of the mRNA transcript as enumerated in the GenBank file. Function refers to how the oligonucleotide probe was used in the bDNA assay. CE, capture extender; LE, label extender; BL, blocker probe.
Gene | GenBank ID | Target | Function | Probe Sequence |
|---|---|---|---|---|
| rbOat1 | AJ242871 | 875-892 | CE | gcttcccattgatccgggTTTTTctcttggaaagaaagt |
| 893-911 | CE | aacttggccccctcttcctTTTTTctcttggaaagaaagt | ||
| 954-972 | CE | ggcctggcctttgctcattTTTTTctcttggaaagaaagt | ||
| 1072-1090 | CE | caaagccctgcaggtccatTTTTTctcttggaaagaaagt | ||
| 815-832 | LE | gggtggagtaccagcgcgTTTTTaggcataggacccgtgtct | ||
| 833-853 | LE | gggtgaggtccagtctcccagTTTTTaggcataggacccgtgtct | ||
| 854-874 | LE | ccactttctgcaaggccttcaTTTTTaggcataggacccgtgtct | ||
| 912-931 | LE | tccggagcacctccatactcTTTTTaggcataggacccgtgtct | ||
| 932-953 | LE | gtcagttccttctgcagattcgTTTTTaggcataggacccgtgtct | ||
| 973-991 | LE | gcagcaactccatggctgaTTTTTaggcataggacccgtgtct | ||
| 1032-1050 | LE | gctggtggcaaaccacagcTTTTTaggcataggacccgtgtct | ||
| 1051-1071 | LE | gaccaacccgtagtaggcaaaTTTTTaggcataggacccgtgtct | ||
| 1114-1131 | LE | cacggcgccaaaaatcacTTTTTaggcataggacccgtgtct | ||
| 995-1009 | BL | ggcggagggcagggc | ||
| 1010-1031 | BL | aaggagaggcagaggaagaggt | ||
| 1091-1113 | BL | ttggattaggtagatgctgaccc | ||
| rbOat2 | 933-952 | CE | tcagggcctctctgctcagaTTTTTTctcttggaaagaaagt | |
| 1126-1143 | CE | cccgaacagcagctgcgtTTTTTctcttggaaaagaaagt | ||
| 1197-1212 | CE | ctgcgtgaggcggcgtTTTTTctcttggaaagaaagt | ||
| 1266-1285 | CE | tccaggagctcctctcggagTTTTTctcttggaaagaaagt | ||
| 916-932 | LE | ccgtcctgaggcacgggTTTTTaggcataggacccgtgtct | ||
| 969-985 | LE | tgcggaccacccgttccTTTTTaggcataggacccgtgtct | ||
| 986-1008 | LE | gaacaggtccaagtatgagggtcTTTTTaggcataggacccgtgtct | ||
| 1025-1044 | LE | gcagcacagggagatgtgccTTTTTaggcataggacccgtgtct | ||
| 1045-1063 | LE | cgccaaaccacaccaccatTTTTTaggcataggacccgtgtct | ||
| 1086-1104 | LE | ccccgacacagccagactcTTTTTaggcataggacccgtgtct | ||
| 1105-1125 | LE | ctgatacacgttcagccccagTTTTTTaggcataggacccgtgtct | ||
| 1144-1160 | LE | gagggcagctccaccgcTTTTTaggcataggacccgtgtct | ||
| 1161-1182 | LE | tgacaggtagaccaggagcttgTTTTTaggcataggacccgtgtct | ||
| 1246-1265 | LE | gccaccagcagtctgatgccTTTTTaggcataggacccgtgtct | ||
| 1286-1302 | LE | caccgctagggcggtgcTTTTTaggcataggacccgtgtct | ||
| 953-968 | BL | ccagccgccacttcgc | ||
| 1009-1024 | BL | tgagcctgggcgtgcg | ||
| 1064-1085 | BL | tggccgtaataggagaagttca | ||
| 1183-1196 | BL | ccggcgtggcgcac | ||
| 1215-1230 | BL | gcccatcagcgtcccg | ||
| 1231-1245 | BL | cagggccagggccgc | ||
| rbOat3 | AJ489526 | 659-678 | CE | agaatgaactggccgatggtTTTTTctcttggaaagaaagt |
| 801-820 | CE | ggcctttgaggacttcccagTTTTTctcttggaaagaaagt | ||
| 881-901 | CE | gagtttgagctcctccaggctTTTTTTctcttggaaagaaagt | ||
| 964-980 | CE | cgcggcgaaggatgggtTTTTTctcttggaaagaaagt | ||
| 638-658 | LE | gtagcagtacccaattgccgtTTTTTTaggcataggacccgtgtct | ||
| 679-695 | LE | cgtaagccaggccaggcTTTTTaggcataggacccgtgtct | ||
| 712-734 | LE | cggatacggttaactgtagccagTTTTTaggcataggacccgtgtct | ||
| 758-781 | LE | ggactctggtatccaccaggataaTTTTTaggcataggacccgtgtct | ||
| 782-800 | LE | ccaggaccagccagcgtatTTTTTaggcataggacccgtgtct | ||
| 821-839 | LE | ctcgccggaggatcttcagTTTTTaggcataggacccgtgtct | ||
| 859-880 | LE | cagcttttctccctcctccttcTTTTTaggcataggacccgtgtct | ||
| 902-923 | LE | aagagatgtccttctgcaggctTTTTTTaggcataggacccgtgtct | ||
| 944-963 | LE | gtccggaacaggtcagctgtTTTTTaggcataggacccgtgtct | ||
| 696-711 | BL | cgccactgggggatgg | ||
| 735-757 | BL | gagggagaagatgaagtagggaa | ||
| 840-858 | BL | ttgccgttgaaggtggcta | ||
| 924-943 | BL | gctgtacttggccttggcca | ||
| rbOct1 | AF015958 | 530-548 | CE | ccagggagccgaggaagaaTTTTTctcttggaaagaaagt |
| 660-677 | CE | gcaggcggaagagcagcaTTTTTctcttggaaagaaagt | ||
| 823-839 | CE | gccagttcgggatggcgTTTTTctcttggaaagaaagt | ||
| 860-877 | CE | gaggaaggtgggcagggaTTTTTctcttggaaagaaagt | ||
| 511-529 | LE | gcccaggttcacgcaggacTTTTTaggcataggacccgtgtct | ||
| 549-569 | LE | tgtctgcgatgtagccgacacTTTTTaggcataggacccgtgtct | ||
| 587-606 | LE | agggtggtcagcagcagacaTTTTTaggcataggacccgtgtct | ||
| 607-624 | LE | cccgacaccgcgttgatcTTTTTaggcataggacccgtgtct | ||
| 625-641 | LE | ccacggccgtgagcaccTTTTTaggcataggacccgtgtct | ||
| 642-659 | LE | tggacgtgtagtccggcgTTTTTaggcataggacccgtgtct | ||
| 692-710 | LE | acatccagctgcccttgctTTTTTaggcataggacccgtgtct | ||
| 711-730 | LE | tgtgatcagggtgtagccggTTTTTaggcataggacccgtgtct | ||
| 731-749 | LE | agcctgagcccacgaactcTTTTTaggcataggacccgtgtct | ||
| 750-767 | LE | tggccaccgtcctcctgtTTTTTaggcataggacccgtgtct | ||
| 768-787 | LE | gaaggccacctggtacaggaTTTTTaggcataggacccgtgtct | ||
| 788-805 | LE | ggccaccagccccacagaTTTTTaggcataggacccgtgtct | ||
| 806-822 | LE | taggcgacgcccgagagTTTTTaggcataggacccgtgtct | ||
| 570-586 | BL | cagcttgcggccaaacc | ||
|
|
| 678-691 | BL | gaccaggccctgca |
| 840-859 | BL | cacagtgagctgcagccagc | ||
| rbOct2 | AF458095 | 1324-1343 | CE | acagtgatcctcagcccctgTTTTTctcttggaaagaaagt |
| 1360-1377 | CE | ggccatggtgatccccatTTTTTctcttggaaagaaagt | ||
| 1417-1438 | CE | caccgagattcctgatgaacgtTTTTTctcttggaaagaaagt | ||
| 1511-1527 | CE | gggcagctgcagccagaTTTTTctcttggaaagaaagt | ||
| 1625-1646 | CE | cttggtctctgcaggttttcagTTTTTctcttggaaagaaagt | ||
| 1673-1693 | CE | cgtctgctttcctaacgtggaTTTTTctcttggaaagaaagt | ||
| 1283-1301 | LE | gaggctagacacgcagcccTTTTTaggcataggacccgtgtct | ||
| 1302-1323 | LE | cagatcatcagggacaaacacgTTTTTaggcataggacccgtgtct | ||
| 1378-1398 | LE | gaccaggcacaccatctcgtaTTTTTaggcataggacccgtgtct | ||
| 1439-1457 | LE | agcgaggagcagaccaggaTTTTTaggcataggacccgtgtct | ||
| 1458-1473 | LE | gccgccgacgtcgcacTTTTTaggcataggacccgtgtct | ||
| 1493-1510 | LE | tggccgtgagccggtagaTTTTTaggcataggacccgtgtct | ||
| 1528-1545 | LE | caccgcgaacaccaccaaTTTTTaggcataggacccgtgtct | ||
| 1546-1563 | LE | tcctgccaccaagcccacTTTTTaggcataggacccgtgtct | ||
| 1564-1583 | LE | ggcagcatcaacaccagtccTTTTTaggcataggacccgtgtct | ||
| 1584-1605 | LE | caaggttctccctttggtttctTTTTTaggcataggacccgtgtct | ||
| 1606-1624 | LE | cttcctcgatggtctcgggTTTTTaggcataggacccgtgtct | ||
| 1647-1672 | LE | cataaatcaccttttctctgttttttTTTTTaggcataggacccgtgtct | ||
| 1344-1359 | BL | cctgcccaagcaggcc | ||
| 1399-1416 | BL | ggggtacagctcggcgtt | ||
| 1474-1492 | BL | ccaggaagggcgtgacgat | ||
| mOat1 | NM008766 | 987-1007 | CE | ccagccttccagaggaggagtTTTTTctcttggaaagaaagt |
| 1065-1088 | CE | gcacctctatactcagcttagcccTTTTTctcttggaaagaaagt | ||
| 1166-1183 | CE | gaggaagaggcgccgaagTTTTTctcttggaaagaaagt | ||
| 1411-1431 | CE | cgaatgattgtatggcccctcTTTTTctcttggaaagaaagt | ||
| 968-986 | LE | accagcgggctgactcaatTTTTTaggcataggacccgtgtct | ||
| 1008-1025 | LE | gggctcggagggtgaggtTTTTTaggcataggacccgtgtct | ||
| 1109-1132 | LE | ctggcctttgtttagagtcagttcTTTTTaggcataggacccgtgtct | ||
| 1133-1149 | LE | agctccatggcggaggcTTTTTaggcataggacccgtgtct | ||
| 1184-1205 | LE | caaaccacagcatagagaggcaTTTTTaggcataggacccgtgtct | ||
| 1228-1247 | LE | cctgcaggtccatgaccagcTTTTTaggcataggacccgtgtct | ||
| 1248-1268 | LE | ggtacatgctgaccccaaagcTTTTTaggcataggacccgtgtct | ||
| 1348-1366 | LE | ggaggccaactgtgcaggcTTTTTaggcataggacccgtgtct | ||
| 1367-1384 | LE | gatgcctgccagcagcagTTTTTaggcataggacccgtgtct | ||
| 1385-1410 | LE | ggtattatgccattcactaggatacaTTTTTaggcataggacccgtgtct | ||
| 1432-1453 | LE | ccctagtacagccagggatgtgTTTTTaggcataggacccgtgtct | ||
| 1026-1042 | BL | gcgggccactctctgca | ||
| 1043-1064 | BL | cctcttcttgtttcccgttgat | ||
| 1089-1108 | BL | cttctgcaggctggtctgga | ||
| 1150-1165 | BL | cgtggggcagcgcagc | ||
| 1206-1227 | BL | ccgtagtaggcaaagctagtgg | ||
| 1269-1289 | BL | cgccgaaaatcacctggataa | ||
| 1290-1307 | BL | tggcaggcaggtccacag | ||
| 1308-1332 | BL | ttgatgactaggaagcacacaaact | ||
| 1333-1347 | BL | cggcggcccatggaa | ||
| mOat2 | BC013474 | 1452-1473 | CE | tgagtgcagtgaatcccattccTTTTTctcttggaaagaaagt |
| 1554-1572 | CE | ccaggaaagaaatccccccTTTTTctcttggaaagaaagt | ||
| 1615-1634 | CE | ctggatggtctctggcagctTTTTTctcttggaaagaaagt | ||
| 1701-1724 | CE | cctgccttctatttccagctacttTTTTTctcttggaaagaaagt | ||
| 1791-1815 | CE | cctgtttttggagactggataaacaTTTTTctcttggaaagaaagt | ||
| 1427-1451 | LE | tgtctgtctgagcacagtagggtacTTTTTaggcataggacccgtgtct | ||
| 1474-1490 | LE | ggcccctagccggcctaTTTTTaggcataggacccgtgtct | ||
| 1510-1530 | LE | gccacactccatccagcaagaTTTTTaggcataggacccgtgtct | ||
| 1594-1614 | LE | gtgctttcttcgtctcaggcaTTTTTaggcataggacccgtgtct | ||
| 1635-1655 | LE | cctcccctttctttccacgtcTTTTTaggcataggacccgtgtct | ||
| 1656-1678 | LE | tcagtcccggatctgtctatcttTTTTTaggcataggacccgtgtct | ||
| 1679-1700 | LE | ggtgagctgtccctaggctaatTTTTTaggcataggacccgtgtct | ||
| 1725-1748 | LE | aatttgatgtcccagtcacaagagTTTTTaggcataggacccgtgtct | ||
| 1749-1769 | LE | agctccatccttaggcagaggTTTTTaggcataggacccgtgtct | ||
| 1770-1790 | LE | caggcagacagcaccagtagcTTTTTaggcataggacccgtgtct | ||
| 1491-1509 | BL | ccaccagtggggccagaga | ||
| 1531-1553 | BL | ataagcaagtttgggcagtaaca | ||
| 1573-1593 | BL | gcaggagtacagtgcaggcag | ||
| mOat3 | NM031194 | 1315-1336 | CE | cccaaatacagccagtgctgttTTTTTctcttggaaagaaagt |
| 1404-1425 | CE | atacccatacctgtttgcctgaTTTTTctcttggaaagaaagt | ||
| 1577-1599 | CE | tcctcgatagtttctggtaagggTTTTTctcttggaaagaaagt | ||
| 1645-1665 | CE | tgggatgccttttctgcttctTTTTTctcttggaaagaaagt | ||
| 1687-1710 | CE | tctgttgttcttagctagggtccaTTTTTctcttggaaagaaagt | ||
| 1337-1356 | LE | gagccagacaggcatcccttTTTTTaggcataggacccgtgtct | ||
| 1380-1403 | LE | ggactgtagggtagagctcacttgTTTTTaggcataggacccgtgtct | ||
| 1426-1448 | LE | ccactcgagcccatatgttactgTTTTTaggcataggacccgtgtct | ||
| 1472-1492 | LE | ctgcagttctcccgtgattttTTTTTaggcataggacccgtgtct | ||
| 1516-1536 | LE | cccagtagagtcatggtcccaTTTTTaggcataggacccgtgtct | ||
| 1557-1576 | LE | ccgattgagggtctcaagcaTTTTTaggcataggacccgtgtct | ||
|
|
| 1666-1686 | LE | ccagtcttcagcgggattgtcTTTTTaggcataggacccgtgtct |
| 1357-1379 | BL | tgtagaggaagaggcagctgaag | ||
| 1449-1471 | BL | caccagtggggctatcatacttc | ||
| 1493-1515 | BL | aagatgacattagggatgaaggg | ||
| 1537-1556 | BL | gaaagaaggcagcactgcct | ||
| 1600-1623 | BL | gtttgctggtaccagtcttgtatg | ||
| 1624-1644 | BL | ggctcctgctttgttttcttg | ||
| mOct1 | NM009202 | 673-691 | CE | cacccagctgcctttgctgTTTTTctcttggaaagaaagt |
| 817-833 | CE | gctggagccagcgccagTTTTTctcttggaaagaaagt | ||
| 850-872 | CE | aatacagcaggaagaggaaggtgTTTTTctcttggaaagaaagt | ||
| 935-956 | CE | gtgcaatttgctccattatcctTTTTTctcttggaaagaaagt | ||
| 1061-1079 | CE | gggtgtgcttcctcaggctTTTTTctcttggaaagaaagt | ||
| 692-714 | LE | tctgtgatcaaggtgtagccagaTTTTTaggcataggacccgtgtct | ||
| 715-735 | LE | ctgtagccagagccgacaaacTTTTTaggcataggacccgtgtct | ||
| 736-758 | LE | ggtacaagatggctgtcgttctcTTTTTaggcataggacccgtgtct | ||
| 778-796 | LE | cccagcaagccccactagcTTTTTaggcataggacccgtgtct | ||
| 873-893 | LE | gggattctgggacaaaccagtTTTTTaggcataggacccgtgtct | ||
| 894-912 | LE | tgagacaacagccaccgggTTTTTaggcataggacccgtgtct | ||
| 978-1000 | LE | gcacatcatcttcaggtcagcagTTTTTaggcataggacccgtgtct | ||
| 1024-1042 | LE | tgcaaacgaaggactccgcTTTTTaggcataggacccgtgtct | ||
| 1080-1105 | LE | agagaaccatagatacatcaggatgaTTTTTaggcataggacccgtgtct | ||
| 1106-1125 | LE | ccctggtacagcacagcacaTTTTTaggcataggacccgtgtct | ||
| 1126-1146 | LE | gctcccacatgcatgatgaggTTTTTaggcataggacccgtgtct | ||
| 1147-1166 | LE | ggtagaggttggcccctgtgTTTTTaggcataggacccgtgtct | ||
| 759-777 | BL | cccactgtgaaggccacct | ||
| 797-816 | BL | tctggaatggcataggccac | ||
| 834-849 | BL | ggcagggacaccgcca | ||
| 913-934 | BL | taccgcttgagtggttctcttc | ||
| 957-977 | BL | ggggcaccttcctgttcttct | ||
| 1001-1023 | BL | ctctctgaggcatcttcctcaag | ||
| 1043-1060 | BL | gggggtgcggaacaggtc | ||
| mOct2 | NM013667 | 1024-1045 | CE | agagagactggcaccgattttcTTTTTctcttggaaagaaagt |
| 1158-1180 | CE | tggtagagaacagagctcgtgaaTTTTTctcttggaaagaaagt | ||
| 1200-1216 | CE | ttgtcccctgcgaggccTTTTTctcttggaaagaaagt | ||
| 1408-1429 | CE | gctatggtgatgcccattctacTTTTTctcttggaaagaaagt | ||
| 998-1023 | LE | catttttcttagcaatatgcttaatgTTTTTaggcataggacccgtgtct | ||
| 1046-1065 | LE | catctgccgtcaggctctgaTTTTTaggcataggacccgtgtct | ||
| 1066-1089 | LE | ggttcaatttcatgccagtatcctTTTTTaggcataggacccgtgtct | ||
| 1134-1157 | LE | ccaattgtacatcaagatcaacgtTTTTTaggcataggacccgtgtct | ||
| 1181-1199 | LE | catgtgcatgatgaggcccTTTTTaggcataggacccgtgtct | ||
| 1244-1262 | LE | agctgggaattccaccaggTTTTTaggcataggacccgtgtct | ||
| 1285-1303 | LE | cggcgaccaatccggtctaTTTTTaggcataggacccgtgtct | ||
| 1304-1324 | LE | tttgacacagcccagggatagTTTTTaggcataggacccgtgtct | ||
| 1325-1343 | LE | ggctgctcctgccaccataTTTTTaggcataggacccgtgtct | ||
| 1344-1365 | LE | ggataaaaaccgaagctaggcaTTTTTaggcataggacccgtgtct | ||
| 1366-1389 | LE | ttttcagccactgtagatcatcagTTTTTaggcataggacccgtgtct | ||
| 1390-1407 | LE | ccaagcacgccacggtaaTTTTTaggcataggacccgtgtct | ||
| 1430-1450 | LE | accaggcagaccatttcgtagTTTTTaggcataggacccgtgtct | ||
| 1090-1110 | BL | tgaccaagtccaggaacgaag | ||
| 1111-1133 | BL | atgtttccttatctgaggggttc | ||
| 1217-1243 | BL | gcagagtagaagaaatccaagtagatg | ||
|
|
| 1263-1284 | BL | tggtgagaatgatgatgaaggc |