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Research ArticleDrug Discovery and Translational Medicine

In Silico Screening Identified Novel Small-molecule Antagonists of PAC1 Receptor

Ichiro Takasaki, Ai Watanabe, Masafumi Yokai, Yurie Watanabe, Daichi Hayakawa, Ryota Nagashima, Mamoru Fukuchi, Takuya Okada, Naoki Toyooka, Atsuro Miyata, Hiroaki Gouda and Takashi Kurihara
Journal of Pharmacology and Experimental Therapeutics April 2018, 365 (1) 1-8; DOI: https://doi.org/10.1124/jpet.117.245415
Ichiro Takasaki
Department of Pharmacology, Graduate School of Science and Engineering (I.T., A.W., R.N.), Graduate School of Innovative Life Sciences (I.T., T.O., N.T.), Department of Molecular Neurobiology, Graduate School of Medical and Pharmaceutical Sciences (M.F.), and Department of Bio-functional Molecular Engineering, Graduate School of Science and Engineering (T.O., N.T.), University of Toyama, Toyama, Japan; Department of Pharmacology, Graduate School of Medical and Dental Sciences, Kagoshima University, Kagoshima, Japan (M.Y., A.M., T.K.); and Department of Analytical and Physical Chemistry, School of Pharmacy, Showa University, Tokyo, Japan (Y.W., D.H., H.G.)
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Ai Watanabe
Department of Pharmacology, Graduate School of Science and Engineering (I.T., A.W., R.N.), Graduate School of Innovative Life Sciences (I.T., T.O., N.T.), Department of Molecular Neurobiology, Graduate School of Medical and Pharmaceutical Sciences (M.F.), and Department of Bio-functional Molecular Engineering, Graduate School of Science and Engineering (T.O., N.T.), University of Toyama, Toyama, Japan; Department of Pharmacology, Graduate School of Medical and Dental Sciences, Kagoshima University, Kagoshima, Japan (M.Y., A.M., T.K.); and Department of Analytical and Physical Chemistry, School of Pharmacy, Showa University, Tokyo, Japan (Y.W., D.H., H.G.)
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Masafumi Yokai
Department of Pharmacology, Graduate School of Science and Engineering (I.T., A.W., R.N.), Graduate School of Innovative Life Sciences (I.T., T.O., N.T.), Department of Molecular Neurobiology, Graduate School of Medical and Pharmaceutical Sciences (M.F.), and Department of Bio-functional Molecular Engineering, Graduate School of Science and Engineering (T.O., N.T.), University of Toyama, Toyama, Japan; Department of Pharmacology, Graduate School of Medical and Dental Sciences, Kagoshima University, Kagoshima, Japan (M.Y., A.M., T.K.); and Department of Analytical and Physical Chemistry, School of Pharmacy, Showa University, Tokyo, Japan (Y.W., D.H., H.G.)
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Yurie Watanabe
Department of Pharmacology, Graduate School of Science and Engineering (I.T., A.W., R.N.), Graduate School of Innovative Life Sciences (I.T., T.O., N.T.), Department of Molecular Neurobiology, Graduate School of Medical and Pharmaceutical Sciences (M.F.), and Department of Bio-functional Molecular Engineering, Graduate School of Science and Engineering (T.O., N.T.), University of Toyama, Toyama, Japan; Department of Pharmacology, Graduate School of Medical and Dental Sciences, Kagoshima University, Kagoshima, Japan (M.Y., A.M., T.K.); and Department of Analytical and Physical Chemistry, School of Pharmacy, Showa University, Tokyo, Japan (Y.W., D.H., H.G.)
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Daichi Hayakawa
Department of Pharmacology, Graduate School of Science and Engineering (I.T., A.W., R.N.), Graduate School of Innovative Life Sciences (I.T., T.O., N.T.), Department of Molecular Neurobiology, Graduate School of Medical and Pharmaceutical Sciences (M.F.), and Department of Bio-functional Molecular Engineering, Graduate School of Science and Engineering (T.O., N.T.), University of Toyama, Toyama, Japan; Department of Pharmacology, Graduate School of Medical and Dental Sciences, Kagoshima University, Kagoshima, Japan (M.Y., A.M., T.K.); and Department of Analytical and Physical Chemistry, School of Pharmacy, Showa University, Tokyo, Japan (Y.W., D.H., H.G.)
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Ryota Nagashima
Department of Pharmacology, Graduate School of Science and Engineering (I.T., A.W., R.N.), Graduate School of Innovative Life Sciences (I.T., T.O., N.T.), Department of Molecular Neurobiology, Graduate School of Medical and Pharmaceutical Sciences (M.F.), and Department of Bio-functional Molecular Engineering, Graduate School of Science and Engineering (T.O., N.T.), University of Toyama, Toyama, Japan; Department of Pharmacology, Graduate School of Medical and Dental Sciences, Kagoshima University, Kagoshima, Japan (M.Y., A.M., T.K.); and Department of Analytical and Physical Chemistry, School of Pharmacy, Showa University, Tokyo, Japan (Y.W., D.H., H.G.)
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Mamoru Fukuchi
Department of Pharmacology, Graduate School of Science and Engineering (I.T., A.W., R.N.), Graduate School of Innovative Life Sciences (I.T., T.O., N.T.), Department of Molecular Neurobiology, Graduate School of Medical and Pharmaceutical Sciences (M.F.), and Department of Bio-functional Molecular Engineering, Graduate School of Science and Engineering (T.O., N.T.), University of Toyama, Toyama, Japan; Department of Pharmacology, Graduate School of Medical and Dental Sciences, Kagoshima University, Kagoshima, Japan (M.Y., A.M., T.K.); and Department of Analytical and Physical Chemistry, School of Pharmacy, Showa University, Tokyo, Japan (Y.W., D.H., H.G.)
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Takuya Okada
Department of Pharmacology, Graduate School of Science and Engineering (I.T., A.W., R.N.), Graduate School of Innovative Life Sciences (I.T., T.O., N.T.), Department of Molecular Neurobiology, Graduate School of Medical and Pharmaceutical Sciences (M.F.), and Department of Bio-functional Molecular Engineering, Graduate School of Science and Engineering (T.O., N.T.), University of Toyama, Toyama, Japan; Department of Pharmacology, Graduate School of Medical and Dental Sciences, Kagoshima University, Kagoshima, Japan (M.Y., A.M., T.K.); and Department of Analytical and Physical Chemistry, School of Pharmacy, Showa University, Tokyo, Japan (Y.W., D.H., H.G.)
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Naoki Toyooka
Department of Pharmacology, Graduate School of Science and Engineering (I.T., A.W., R.N.), Graduate School of Innovative Life Sciences (I.T., T.O., N.T.), Department of Molecular Neurobiology, Graduate School of Medical and Pharmaceutical Sciences (M.F.), and Department of Bio-functional Molecular Engineering, Graduate School of Science and Engineering (T.O., N.T.), University of Toyama, Toyama, Japan; Department of Pharmacology, Graduate School of Medical and Dental Sciences, Kagoshima University, Kagoshima, Japan (M.Y., A.M., T.K.); and Department of Analytical and Physical Chemistry, School of Pharmacy, Showa University, Tokyo, Japan (Y.W., D.H., H.G.)
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Atsuro Miyata
Department of Pharmacology, Graduate School of Science and Engineering (I.T., A.W., R.N.), Graduate School of Innovative Life Sciences (I.T., T.O., N.T.), Department of Molecular Neurobiology, Graduate School of Medical and Pharmaceutical Sciences (M.F.), and Department of Bio-functional Molecular Engineering, Graduate School of Science and Engineering (T.O., N.T.), University of Toyama, Toyama, Japan; Department of Pharmacology, Graduate School of Medical and Dental Sciences, Kagoshima University, Kagoshima, Japan (M.Y., A.M., T.K.); and Department of Analytical and Physical Chemistry, School of Pharmacy, Showa University, Tokyo, Japan (Y.W., D.H., H.G.)
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Hiroaki Gouda
Department of Pharmacology, Graduate School of Science and Engineering (I.T., A.W., R.N.), Graduate School of Innovative Life Sciences (I.T., T.O., N.T.), Department of Molecular Neurobiology, Graduate School of Medical and Pharmaceutical Sciences (M.F.), and Department of Bio-functional Molecular Engineering, Graduate School of Science and Engineering (T.O., N.T.), University of Toyama, Toyama, Japan; Department of Pharmacology, Graduate School of Medical and Dental Sciences, Kagoshima University, Kagoshima, Japan (M.Y., A.M., T.K.); and Department of Analytical and Physical Chemistry, School of Pharmacy, Showa University, Tokyo, Japan (Y.W., D.H., H.G.)
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Takashi Kurihara
Department of Pharmacology, Graduate School of Science and Engineering (I.T., A.W., R.N.), Graduate School of Innovative Life Sciences (I.T., T.O., N.T.), Department of Molecular Neurobiology, Graduate School of Medical and Pharmaceutical Sciences (M.F.), and Department of Bio-functional Molecular Engineering, Graduate School of Science and Engineering (T.O., N.T.), University of Toyama, Toyama, Japan; Department of Pharmacology, Graduate School of Medical and Dental Sciences, Kagoshima University, Kagoshima, Japan (M.Y., A.M., T.K.); and Department of Analytical and Physical Chemistry, School of Pharmacy, Showa University, Tokyo, Japan (Y.W., D.H., H.G.)
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Figures

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  • Fig. 1.
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    Fig. 1.

    Multifilter virtual screening.

  • Fig. 2.
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    Fig. 2.

    (A) NMR structure of the N-terminal extracellular (EC) domain of PAC1 receptor in complex with PACAP 6–38 (green). (B) Interaction of Y22, V26, and R30 of PACAP 6–38 with PAC1 receptor. Hydrogen-bonding interactions are indicated by dashed yellow lines.

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    Fig. 3.

    Effects of 10 candidate compounds on the PACAP-induced phosphorylation of CREB in the CHO cells expressing PAC1 receptors. The cells were incubated with PACAP 6–38 (1 nM) or each compound (1 nM) for 30 minutes, then the cells were stimulated with PACAP (1 nM) for 30 minutes and lysed. The lysates containing equivalent amounts of protein (20 µg) were subjected to SDS-PAGE. Immunoblots were probed with specific antibodies that recognize phosphorylated form of CREB (pCREB) and total CREB. The data represent the mean ± S.E.M. (n = 4 to 5). *P < 0.05 vs. dimethylsulfoxide (DMSO) control.

  • Fig. 4.
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    Fig. 4.

    Effects of PA-8 or PA-9 on the PACAP-induced phosphorylation of CREB in the CHO cells expressing PAC1, VPAC1, or VPAC2 receptors. The cells were incubated with PA-8 or PA-9 compounds (10 pM to 10 nM) for 30 minutes, then the cells were stimulated with PACAP (1 nM). The data represent the mean ± S.E.M. (n = 3–5).

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    Fig. 5.

    Dose-dependent inhibitory effects of PA-8, PA-9, or PA-10 on the PACAP-induced cAMP elevation in the CHO cells expressing PAC1 receptors. The cells were incubated with PA-8, PA-9, or PA-10 (1 pM to 100 µM) for 30 minutes, then the cells were stimulated with PACAP (1 nM) for 1 hour and assessed the level of cAMP using cAMP-Glo Assay kit. The data represent the mean ± S.E.M. (n = 3–5).

  • Fig. 6.
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    Fig. 6.

    Blockade of PACAP-induced aversive responses and mechanical allodynia by the identified PA compounds. (A) A single intrathecal injection of PACAP (100 pmol) induced transient aversive responses, and the PACAP-induced behaviors were ameliorated by co-injection of PA-8, PA-9, or PA-10 (100 pmol each). (B) PA-8, PA-9, or PA-10 (100 pmol each intrathecally) in itself did not induce aversive responses. (C) A single intrathecal injection of PACAP (100 pmol) induced long-lasting mechanical allodynia, and the induction of allodynia was prevented by co-injection of PA-8, PA-9, or PA-10 (100 pmol each). (D) PA-8, PA-9, or PA-10 (100 pmol each intrathecally) per se did not induce mechanical allodynia. *P < 0.05 compared with vehicle. #P < 0.05 compared with PACAP.

  • Fig. 7.
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    Fig. 7.

    Docking models of PA-8 (A) or PA-9 (B) with PAC1 receptor. Hydrogen-bonding interactions are indicated by yellow dashed lines.

Additional Files

  • Figures
  • Data Supplement

    • Supplemental Figure 1 -


       3D pharmacophore models 1(A) and 2 (B) for first-stage screening.

    • Supplemental Figure 2 -

      Chemical structure of 10 compounds identified by in silico screening.

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Journal of Pharmacology and Experimental Therapeutics: 365 (1)
Journal of Pharmacology and Experimental Therapeutics
Vol. 365, Issue 1
1 Apr 2018
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Research ArticleDrug Discovery and Translational Medicine

Identification of Small-molecule Antagonist of PAC1

Ichiro Takasaki, Ai Watanabe, Masafumi Yokai, Yurie Watanabe, Daichi Hayakawa, Ryota Nagashima, Mamoru Fukuchi, Takuya Okada, Naoki Toyooka, Atsuro Miyata, Hiroaki Gouda and Takashi Kurihara
Journal of Pharmacology and Experimental Therapeutics April 1, 2018, 365 (1) 1-8; DOI: https://doi.org/10.1124/jpet.117.245415

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Research ArticleDrug Discovery and Translational Medicine

Identification of Small-molecule Antagonist of PAC1

Ichiro Takasaki, Ai Watanabe, Masafumi Yokai, Yurie Watanabe, Daichi Hayakawa, Ryota Nagashima, Mamoru Fukuchi, Takuya Okada, Naoki Toyooka, Atsuro Miyata, Hiroaki Gouda and Takashi Kurihara
Journal of Pharmacology and Experimental Therapeutics April 1, 2018, 365 (1) 1-8; DOI: https://doi.org/10.1124/jpet.117.245415
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