User profiles for P Adams

Paul D. Adams

Lawrence Berkeley Laboratory & University of California Berkeley
Verified email at lbl.gov
Cited by 121539

[HTML][HTML] Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix

…, LL Videau, CJ Williams, PD Adams - … Section D: Structural …, 2019 - scripts.iucr.org
Diffraction (X-ray, neutron and electron) and electron cryo-microscopy are powerful
methods to determine three-dimensional macromolecular structures, which are required to …

[PDF][PDF] Cellular senescence: defining a path forward

V Gorgoulis, PD Adams, A Alimonti, DC Bennett… - Cell, 2019 - cell.com
Cellular senescence is a cell state implicated in various physiological processes and a wide
spectrum of age-related diseases. Recently, interest in therapeutically targeting senescence …

The Phenix software for automated determination of macromolecular structures

PD Adams, PV Afonine, G Bunkóczi, VB Chen… - Methods, 2011 - Elsevier
X-ray crystallography is a critical tool in the study of biological systems. It is able to provide
information that has been a prerequisite to understanding the fundamentals of life. It is also a …

Accurate prediction of protein structures and interactions using a three-track neural network

…, LN Kinch, RD Schaeffer, C Millán, H Park, C Adams… - Science, 2021 - science.org
… The ADAMs contain prodomain and metalloprotease domains; the fold of the … with
experimental data that suggest that the ADAM prodomain inhibits metalloprotease activity using a …

[HTML][HTML] PHENIX: a comprehensive Python-based system for macromolecular structure solution

PD Adams, PV Afonine, G Bunkóczi… - … Section D: Biological …, 2010 - scripts.iucr.org
Macromolecular X-ray crystallography is routinely applied to understand biological processes
at a molecular level. However, significant time and effort are still required to solve and …

[HTML][HTML] Towards automated crystallographic structure refinement with phenix. refine

…, A Urzhumtsev, PH Zwart, PD Adams - … Section D: Biological …, 2012 - scripts.iucr.org
… j, U local,i and U local,j are the corresponding isotropic ADPs and p and q are empirical
constants. By default, R, p and q are fixed at empirically derived values of 5.0 Å, 1.69 and 1.03, …

Crystallography & NMR system: A new software suite for macromolecular structure determination

…, PD Adams, GM Clore, WL DeLano, P Gros… - … Section D: Biological …, 1998 - scripts.iucr.org
A new software suite, called Crystallography & NMR System (CNS), has been developed for
macromolecular structure determination by X-ray crystallography or solution nuclear …

Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates Aβ, tau, immunity and lipid processing

…, NC Fox, SH Choi, I Mateo, JT Hughes, HH Adams… - Nature …, 2019 - nature.com
Risk for late-onset Alzheimer’s disease (LOAD), the most prevalent dementia, is partially
driven by genetics. To identify LOAD risk loci, we performed a large genome-wide association …

Autophagy mediates degradation of nuclear lamina

…, WX Zong, T Johansen, RD Goldman, PD Adams… - Nature, 2015 - nature.com
Macroautophagy (hereafter referred to as autophagy) is a catabolic membrane trafficking
process that degrades a variety of cellular constituents and is associated with human diseases …

[HTML][HTML] Phaser crystallographic software

AJ McCoy, RW Grosse-Kunstleve, PD Adams… - Journal of applied …, 2007 - iucr.org
… used here does not refer to the degeneracy in the coordinates of the first MR model to be
fixed in space groups with an undefined origin (eg the y coordinate in the standard setting of P2 …