Development of a sensitive multi-well colorimetric assay for active NFkappaB

Nucleic Acids Res. 2001 Feb 15;29(4):E21. doi: 10.1093/nar/29.4.e21.

Abstract

The transcription factor nuclear factor kappaB (NFkappaB) is a key factor in the immune response triggered by a wide variety of molecules such as inflammatory cytokines, or some bacterial and viral products. This transcription factor represents a new target for the development of anti-inflammatory molecules, but this type of research is currently hampered by the lack of a convenient and rapid screening assay for NFkappaB activation. Indeed, NFkappaB DNA-binding capacity is traditionally estimated by radioactive gel shift assay. Here we propose a new DNA-binding assay based on the use of multi-well plates coated with a cold oligonucleotide containing the consensus binding site for NFkappaB. The presence of the DNA-bound transcription factor is then detected by anti-NFkappaB antibodies and revealed by colorimetry. This assay is easy to use, non-radioactive, highly reproducible, specific for NFkappaB, more sensitive than regular radioactive gel shift and very convenient for high throughput screening.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Antibodies / immunology
  • Antibody Specificity
  • Base Sequence
  • Binding, Competitive
  • Cell Extracts
  • Cell Line
  • Colorimetry
  • Consensus Sequence / genetics
  • DNA / genetics
  • DNA / metabolism
  • Dimerization
  • Humans
  • NF-kappa B / immunology
  • NF-kappa B / metabolism*
  • NF-kappa B p50 Subunit
  • Oligonucleotide Probes / genetics
  • Oligonucleotide Probes / metabolism
  • Protein Binding
  • Rabbits
  • Reproducibility of Results
  • Response Elements / genetics*
  • Sensitivity and Specificity

Substances

  • Antibodies
  • Cell Extracts
  • NF-kappa B
  • NF-kappa B p50 Subunit
  • Oligonucleotide Probes
  • DNA