TABLE 5

Distribution of CYP2A13 variations in human lung samples used for mRNA analysis The 16 human lung samples that were used for allele-specific quantification of relative CYP2A13 mRNA levels were further analyzed for additional CYP2A13 variations in the range of -2 kilobases to 3′-UTR. The -729C > T SNP and the ACC insertion between nucleotides 1634 and 1635 (in exon 3) were not detected in any of the DNA samples, whereas the 1757A > G (in intron 3, or I3) and 7520C > G (in 3′-UTR) SNPs were heterozygous in all 16 samples. The -2000C > G, -1638G > T, and -886T > C variations have not been reported previously.


Tissue ID

—2000C > G

—1638G > T

—1479T > C

—1240A > G

—886T > C

—411G > A

1706C > G

2211T > C

2366C > T

2537A > C

2593G > A

6424C > T

6432C > T

7233T > G
(E3) (I4) (I4) (I4) (I4) (I7) (I7) (I8)
A8 HO HO HO HE HE HE HE HE
A10 HE HE HE HE HE HE HE
A13 HE HE HE HE HE HE HE HE HE
P2 HE HE HE HE HE HE
P4 HE HE HE HE HE
All othersa


HE
HE

HE

HE

HE
HE
HE

HE
  • HE and HO, heterozygous and homozygous, respectively, for the variant nucleotide.

  • a The other 11 samples (A9, A11, A12, P1, P3, P5, and F1—F5) all had identical SNPs