Simulation execution and evaluation | monteCarloRuns | 48 | 48 | 48 | Simulation control |
| cycleLimit | 200 | 200 | 200 | |
| stepsPerCycle | 2 | 2 | 2 | |
| currentRuns | 0 | 0 | 0 | |
| runFileNameBase | run | run | run | Simulation monitor |
| nominalProfile | dat | dat | dat | |
| SimularityMeasure | global_sd | global_sd | global_sd | Result evaluation |
Lobule | GraphInputFile | | | | Sinusoidal network |
| GraphSpecFile | lobule-j301 | lobule-j301 | lobule-j301 | |
| GraphSpecIterates | 1 | 1 | 1 | |
| SSTypeRatioa | 19 | 99 | 19 | Shorter, wider SS specification |
| DirSinCirca | 24 | 22 | 24 | |
| DirSinLenAlpha | 1.0 | 1.0 | 1.0 | |
| DirSinLenBeta | 0.085 | 0.085 | 0.085 | |
| DirSinLenShift | 3.0 | 3.0 | 3.0 | |
| TortSinCirc | 3 | 3 | 3 | Longer, thinner SS specification |
| TortSinLenAlpha | 12.0 | 12.0 | 12.0 | |
| TortSinLenBeta | 0.075 | 0.075 | 0.075 | |
| A2BJumpProba,b | 0.38 | 0.20 | 0.35 | Probabilistic compound movement |
| B2AJumpProba,b | 0.37 | 0.30 | 0.35 | |
| B2CJumpProba,b | 0.55 | 0.34 | 0.65 | |
| C2BJumpProba,b | 0.478 | 0.55 | 0.25 | |
| CoreFlowRate | 2 | 2 | 2 | Flow rate control |
| SinusoidTurboa | 0.82 | 0.85 | 0.82 | |
| ECDensitya | 0.65 | 0.60 | 0.65 | Cell density |
| HepDensitya | 0.70 | 0.65 | 0.70 | |
| BindersPerCella,b | 95 | 65 | 75 | Solute binding control |
| SoluteBindingProba,b | 0.5 | 0.38 | 0.5 | |
| SoluteBindingCyclesa,b | 11 | 28 | 10 | |
| MetabolizeProbb | 0.02 | 0.02 | 0.02 | Metabolism control |
| SoluteScaleb,c | 1.0 | 1.0 | 1.0 | |
Dosage parameter and time | a | 5000 | 5000 | 5000 | Dosage parameters |
| ba,b | 1 | 2 | 2 | |
| c | 2 | 2 | 2 | |
| injectTimea | 2.0 | 0.0 | 0.0 | Bolus injection time |