TABLE 2

Genes in the top networks altered by Indo, NS-398, and SC-560, identified by Ingenuity Pathway Analysis


NSAID

Genes in Network
Indo Down-regulated
    PTN (pleiotrophin), -4.0
    TAGLN (transgelin), -3.6
    NID (nidogen), -2.2
    CXCL2 (chemokine (C-X-C motif) ligand 2), -2.1
    H19 (H19 fetal liver mRNA), -2.1
    CALD1 (caldesmon 1), -1.4
    FST (follistatin), -1.2
    SDC1 (syndecan 1), -1.1
    PTMA (prothymosin α), -1.1
    TNC (tenascin C), -1.1
    SDC4 (syndecan 4), -1.0
Unchanged
    DNMT1 (DNA (cytosine-5-)-methyltransferase 1)
    FN1 (fibronectin 1)
    ROCK1 (Rho-associated coiled-coil forming kinase 1)
    INHBA (inhibin, β A)
    LGALS3BP (galectin-3 binding protein)
Up-regulated
    BMP7 (bone morphogenetic protein 7), +2.4
    CEACAM1 (carcinoembryonic antigen-related cell adhesion molecule 1), +2.3
    CSPG2 (chondroitin sulfate proteoglycan 2), +2.0
    FABP4 (fatty acid binding protein 4), +6.5
    INHBE (inhibin, β E), +2.1
    CAST (calpastatin), +1.4
    GSN (gelsolin), +1.3
    CASP3 (caspase 3), +1.1
    IER3 (immediate early response 3), +1.1
    MYC (myelocytomatosis viral oncogene), +1.1
    RELA (v-rel reticuloendotheliosis viral oncogene homolog A), +1.1
NS-398 Down-regulated
    TAGLN (transgelin), -3.7
    STX5A (syntaxin 5), -3.4
    CAPN8, (calpain 8), -3.2
    GPAM (glycerol-3-phosphate acyltransferase, mitochondrial), -2.8
    PTN (pleiotrophin), -2.5
    MAP3K12 (MAP kinase kinase kinase 12), -2.3
    PIK3CA (phosphoinositide-3-kinase, catalytic, α polypeptide), -2,2
    IGFPB6 (IGF binding protein 6), -2.1
    RIN1 (Ras and Rab interactor 1), -2.1
    PIAS2 (protein inhibitor of activated STAT, 2), -1.9
    NRC31 [nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)], -1.6
    SPARC (secreted protein, acidic, cysteine-rich (osteonectin)), -1.5
    Scd2 (stearyl-coenzyme A desaturase 2), -1.3
    CAPN2 (calpain 2), -1.2
    CAPN5 (calpain 5), -1.2
    FMR1 (fragile X mental retardation syndrome 1 homolog), -1.2
    MTPN (Myotrophin), -1.2
    PIK3CB (phosphatidylinositol 3-kinase, catalytic, β polypeptide), -1.2
    CAPNS1 (calpain small subunit), -1.1
    EDN1 (endothelin 1), -1.1
    FASN (fatty acid synthase), -1.1
    NRAS (neuroblastoma ras oncogene), -1.1
    SREBF1 (sterol regulatory element binding factor 1), -1.1
Unchanged
    CAPN10 (calpain 10)
    RAF1 (v-raf-1 murine leukemia viral oncogene homolog 1)
Up-regulated
    FABP4 (fatty acid binding protein 4), +2.6
    IL6 (interleukin 6), +2.2
    VEGF (vascular endothelial growth factor A), +2.0
    MIF (macrophage migration inhibitory factor), +1.5
    VCAM1 (vascular cell adhesion molecule 1), +1.3
    MYC (myelocytomatosis viral oncogene), +1.2
    PPID (peptidylprolyl isomerase D (cyclophilin D)), +1.1
    RPS7 (ribosomal protein S7), +1.1
    S100A6 (calcyclin), +1.1
SC-560 Down-regulated
    ITGB8 (integrin β 8), -2.9
    ITGAV (integrin, α V), -1,1
Unchanged
    FN1
Up-regulated

    None