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Vol. 302, Issue 3, 1238-1245, September 2002
Departments of Pharmacology (S.L.K., J.M.S., B.T.) and Pharmaceutical Sciences (K.L.D., V.G.E.), and Human Medical Genetics Program (M.A.E.), University of Colorado Health Sciences Center, Denver, Colorado
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Abstract |
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In previous work, we identified genetic correlations between cAMP accumulation in the cerebellum and sensitivity to the incoordinating effects of ethanol. A genetic correlation suggests that common genes underlie the phenotypes investigated. One method for provisionally identifying genes involved in a given phenotypic measure is quantitative trait locus (QTL) analysis. Using a panel of 30 BXD recombinant inbred strains of mice and the progenitors (DBA/2J and C57BL/6J), and the dowel test for ataxia, we measured the blood ethanol concentrations at the time an animal first fell from the dowel and acute functional tolerance (AFT), and investigated cAMP signaling in the cerebellum. Cyclic AMP accumulation was measured in whole-cell preparations of cerebellar minces from individual mice under basal or stimulated conditions. We conducted a genome-wide QTL analysis of the behavioral and biochemical measures with >2000 genetic markers to identify significant associations. Western blot and comparative sequencing analysis were used to compare cAMP response element binding protein (CREB) levels and protein-coding sequence, respectively. QTL analyses correlating strain means with allelic status at genetic markers identified several significant associations (p < 0.01). Analysis of variance revealed an effect of strain on behavioral and biochemical measures. There was a significant genetic correlation between initial sensitivity and basal cAMP accumulation in the cerebellum. We identified 6 provisional QTLs for initial sensitivity on four chromosomes, 6 provisional QTLs for AFT on four chromosomes, and 11 provisional QTLs for cAMP signaling on nine chromosomes. Two loci were found to overlap for measures of initial sensitivity and for cAMP signaling. Given the genetic correlation between initial sensitivity and basal cAMP accumulation, we investigated candidate genes in a QTL on chromosome 1. Comparative sequence analysis was performed, and protein levels were compared between C57 and DBA mice for Creb1. No significant differences were detected in coding sequence or protein levels for CREB. These results suggest that although ethanol sensitivity and cAMP signaling are determined by multiple genes, they may share certain genetic codetermination.
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Introduction |
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Inbred
strains of mice have been used to establish genetic contributions to
various ethanol-induced behaviors including hypothermia, ataxia,
hypnotic responses, and withdrawal (for review see Phillips and Crabbe,
1991
). Ethanol-induced ataxia is clinically important and a good
measure of intoxication. Several studies using various measures of
ataxia have shown differences in initial sensitivity and acute
tolerance across inbred strains (Gallaher et al., 1996
; Browman and
Crabbe, 2000
; Deitrich et al., 2000
; Gehle and Erwin, 2000
; Kirstein
and Tabakoff, 2001
). The dowel test for ataxia is a fairly simple test
of coordination and balance that allows for the measurement of both
initial sensitivity and acute tolerance to ethanol. Using nine inbred
strains of mice, we found a significant effect of strain on initial
sensitivity and acute functional tolerance (AFT) using the dowel test
for ataxia, but there was no correlation between these two measures
(Kirstein and Tabakoff, 2001
).
Alcoholics have been shown to differ in their platelet adenylyl cyclase
activity (Tabakoff et al., 1988
). Furthermore, individuals who are
family-history-positive for alcoholism have been shown to differ in
their platelet adenylyl cyclase activity compared with
family-history-negative individuals (Menninger et al., 1998
). A role
for cAMP signaling in neuronal sensitivity to ethanol has been
demonstrated by showing that ethanol-induced inhibition of cerebellar
Purkinje neurons involves cAMP signaling (Freund and Palmer, 1997
).
Cyclic AMP signaling has also been implicated more directly in
behavioral sensitivity to ethanol through mutational studies in
Drosophila. Mutants (e.g., cheapdate) have been
identified that have deficits in cAMP signaling and are more sensitive
to ethanol on a measure of postural control (Moore et al., 1998
). Additionally, studies in mice have demonstrated that modulation of the
cAMP signaling pathway can lead to alterations in sensitivity to
ethanol-induced ataxia (Durcan et al., 1991
; Dar, 1997
; Yoshimura et
al., 1998
).
Recombinant inbred (RI) mice can be used for quantitative trait loci
(QTLs) mapping to provisionally identify the location of genes that
influence the complex behaviors being studied (for reviews see
Gora-Maslak et al., 1991
; Plomin et al., 1991
; Moore and Nagle, 2000
;
Wehner et al., 2001
). BXD RI mice are derived from C57BL/6J (C57) and
DBA/2J (DBA) mice and have been used extensively in addiction research
and to map QTLs responsible for alcohol-related phenotypes (Crabbe et
al., 1999
; Plomin and McClearn, 1993
; Crabbe, 2001
). In our previous
study, the C57 and DBA mice showed significant differences in cAMP
accumulation in the cerebellum and in initial sensitivity on the dowel
test for ataxia (Kirstein and Tabakoff, 2001
). Therefore, the BXD RI
strains of mice were expected to show a great deal of genetic variation
on these measures. The purpose of the current study was to better
locate and characterize the genetic determinants that influence
sensitivity to ethanol and cAMP signaling.
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Materials and Methods |
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Subjects. Male BXD RI mice and the parental strains, C57BL/6J (C57) and DBA/2J (DBA), were purchased from The Jackson Laboratory (Bar Harbor, ME). A total of 238 mice were used. Prior to our experiments, mice were group-housed (one to five littermates per cage) in the University of Colorado Health Sciences Center Animal Research Center and allowed to acclimate to their surroundings for at least 1 week before testing. Food and water were available ad libitum, and mice were maintained on a 12-h light/dark cycle (lights on at 7:00 AM). Behavioral testing was performed in mice of 55 to 80 days of age. Testing was performed between 9:00 AM and 3:00 PM. The Institutional Animal Care and Use Committee of the University of Colorado Health Sciences Center approved all testing procedures.
Dowel Test for Ataxia.
Initial sensitivity was measured
using the dowel test for ataxia (Erwin and Deitrich, 1996
). We
considered that the determination of the initial concentration of
ethanol close to its site of action in brain
(BEC0) at the time that the animal showed a
particular response to ethanol (i.e., loss of balance on the dowel) was
a reflection of "initial sensitivity". Initial sensitivity was, therefore, defined by the blood ethanol concentration
(BEC0; blood derived from the retro-orbital
sinus) at loss of balance on the dowel after the first ethanol
injection. Prior to ethanol injection, mice were trained to balance on
the stationary wood dowel [0.5-inch diameter (1.27 cm)] 50 cm above a
floor of wood shavings until a criterion of 5 min was met. Most mice
met this criterion during the first try; those that did not met this
criterion upon the second attempt. Mice were then given an injection of
ethanol [1.75 g/kg, 10% (w/v) in saline i.p.] and placed on the
dowel. Once mice lost their balance and fell from the dowel, a blood
sample was obtained from the retro-orbital sinus, and this was
designated BEC0. The mice were then tested
intermittently for their ability to remain on the dowel for 1 min. At
this time, another blood sample was obtained and designated
BEC1. The mice then received a second injection
of ethanol [2 g/kg, 10% (w/v) i.p.]. Mice were tested at 5-min
intervals until they regained their balance on the dowel, and upon
regain of balance, a third blood sample was obtained
(BEC2). Acute functional tolerance (AFT) was
defined as the difference between BEC2 and
BEC1 (AFT = BEC2
BEC1). Blood ethanol concentrations were
determined by enzymatic assay (Lundquist, 1959
). Times for loss and
regain of balance were recorded for all mice. A group of 10 to
12 mice were tested for initial sensitivity and acute functional
tolerance each day. Depending on the availability of specific strains,
mice were tested within the designated age range, and mice of three to
five strains were tested per day. C57 and DBA mice were included as
subjects on each test day throughout the study.
Whole-Cell Assay of cAMP Production.
Cyclic AMP accumulation
was measured in whole-cell preparations of cerebellum using the method
of Shimizu et al. (1969)
with modifications as reported by Kirstein and
Tabakoff (2001)
. The cerebellum was dissected on ice from the brains of
mice exactly 1 week after behavioral testing. Briefly, brains were
removed rapidly from decapitated mice and rinsed with ice-cold
Krebs-Ringer bicarbonate (KRB) buffer on an ice-cold dissection block.
The cerebellum was obtained by dissection from the brain stem and was
placed in ice-cold KRB buffer containing 120 mM NaCl, 5 mM KCl, 1.3 mM
CaCl2, 1.2 mM MgCl2, 1.0 mM
KH2PO4, 20 mM
NaHCO3, and 11.1 mM glucose that was gassed with
95% O2/5% CO2. All
chemicals were obtained from Sigma-Aldrich (St. Louis, MO),
unless noted otherwise. Brain tissue was minced using a McIlwain tissue
chopper (The Mickle Laboratory Engineering Co. Ltd., Guildford, Surrey, UK) (35 µm × 35 µm) by cross-chopping twice. The
tissue was then suspended in KRB. Brain minces were incubated at 10°C
for 30 min. Minces were washed once and resuspended in 5 ml of KRB
containing [3H]adenine (21.0 Ci/mmol; Amersham
Biosciences Inc., Piscataway, NJ) (4 µCi/ml) and incubated for 60 min
at 32°C under a 95% O2/5% CO2 atmosphere. Tissue was then washed twice with
fresh KRB and distributed (250 µl) into each well of a 24-well cell
culture plate containing KRB buffer, 1 mM 3-isobutyl-1-methylxanthine (a phosphodiesterase inhibitor) (Calbiochem, La Jolla, CA), and stimulant (forskolin or isoproterenol). The assay was carried out for
15 min in a 32°C water bath. The reaction was stopped with 50 µl of
100% (w/v) trichloroacetic acid. Unlabeled cAMP and
[
-32P]ATP (PerkinElmer Life Sciences,
Boston, MA) were added for recovery calculations (Johnson et al.,
1994
). After sequential chromatography on Dowex and alumina columns
using the method of Salomon et al. (1974)
, samples were quantitated by
liquid scintillation counting. cAMP production was calculated as the
percentage conversion of [3H]ATP to
[3H]cAMP.
Western Blot Analysis of cAMP Response Element Binding Protein (CREB). The cerebellum was dissected as described above from C57 or DBA mice and was homogenized by sonication in 10 volumes of 2% SDS (two times at 50% for 15 s), and boiled for 5 min. After protein determination (bicinchoninic acid method; Pierce, Rockford, IL), 5-µg aliquots of protein from individual animals were subjected to SDS-polyacrylamide gel electrophoresis using an 8% resolving gel (Novex; Invitrogen, Carlsbad, CA). Proteins were transferred electrophoretically to nitrocellulose membrane (22 µm; Osmonics, Inc., Westborough, MA). Blots were blocked and then incubated with primary antibody (Creb, 1:1000; Cell Signaling Technology, Beverly, MA) as per the manufacturer's instructions with the following exceptions. Blots were washed in Tris-buffered saline with 0.05% Tween. The blots were then incubated with horseradish peroxidase conjugated to goat anti-rabbit IgG for 1 h at room temperature, and protein was visualized using the enhanced chemiluminescence method according to the manufacturer's instructions (Renaissance; PerkinElmer Life Sciences). After exposure to Kodak X-Omat X-ray film (Eastman Kodak, Rochester, NY), blots were stained for total protein using India Ink stain.
Quantitation of immunoreactive bands on the film was performed by image analysis (Molecular Analyst; Bio-Rad, Hercules, CA). Corrections for differences in gel loading and/or transfer artifacts were performed by stripping blots and re-probing with anti-
-actin (1:1000;
Sigma-Aldrich) followed by horseradish peroxidase conjugated to goat
anti-mouse IgG. Washing, blocking, and staining were performed as
described above. A standard curve was included on each blot to
determine linearity of signal and for comparison across blots.
Preparation of Brain cDNA and Amplification for Sequencing.
Preparation of PCR products from Creb1 cDNA was
performed as described by Ehringer et al. (2001)
. Briefly, C57 and DBA
mice were sacrificed by cervical dislocation, and cerebellum was
isolated and immediately frozen on liquid nitrogen. Total RNA was
obtained from individual animals with the RNAgents Total RNA Isolation System (Promega, Madison, WI). Using the SuperScript First-Strand Synthesis System for reverse transcription-PCR (Invitrogen), cDNA was
generated. cDNAs from three C57 or three DBA mice were combined. Primers were designed to amplify overlapping segments of the
Creb1 cDNA, each approximately 400 bases. The program
Primer3 (Rozen and Skaletsky, 2000
,
http://www-genome.wi.mit.edu/cgi-bin/primer/primer3www.cgi) was used to identify primer oligonucleotides with the appropriate features: 18 to 22 nucleotides, 40 to 60% GC content, and estimated annealing temperatures of 55-62°C. M13 phage promoter universal tails were added to the 5' ends so that a single primer could be used
for sequencing reactions. Polymerase chain reactions were carried out
in PerkinElmer GeneAmp PCR System 9600 machines with cycling parameters
as follows: 4 min at 94°C, 35 cycles of 30 s at 94°C, 75 s at 58°C, 75 s at 72°C, followed by 10 min at 72°C. Ready-To-Go PCR beads (Amersham Biosciences, Piscataway, NJ) were dispensed into 200-µl tubes, and cDNA, water and primers were added
to a final volume of 35 µl. The products were viewed on ethidium-stained 1.8% agarose gels by using UV light. Bands of the
appropriate size were cut out of the gel and placed in 1.5-ml tubes,
and the PCR products were purified using the QIAquick Gel Extraction
Kit (QIAGEN, Valencia, CA).
Sequencing Analysis.
PCR products were sequenced directly as
described by Ehringer et al. (2001)
, using the ABI Prism Big Dye
Terminator Sequencing Ready Reaction Kit (Applied Biosystems, Foster
City, CA). Sequencing reactions were carried out as follows: 35 cycles
of 10 s at 96°C, 50 s at 50°C, and 4 min at 60°C.
Precipitated samples were loaded onto an ABI 373 Automated Sequencer or
an ABI 3100 Genetic Analyzer (Applied Biosystems). Sequence data
were transferred to a UNIX computer, where they were analyzed by using
the programs CONSED, Phred, and Phrap (Ewing and Green, 1998
; Gordon et
al., 1998
). A minimum coverage of four times (two forward and two
reverse reads) was completed for each section of
Creb1 cDNA for each mouse strain. PolyPhred was used
to assist in the identification of potential DNA differences (Nickerson
et al., 1997
). Sequences were submitted to GenBank
(http://www.ncbi.nlm.nih.gov/; see Results).
Statistical Analyses.
Final analyses for strain means and
QTLs are reported for 30 strains of BXD RI mice. Statistical analysis
of initial sensitivity (BEC0), AFT, and cAMP
production data was performed using ANOVA. Post hoc analysis used the
Tukey test. Genetic correlations were calculated among strain means
using Pearson product moment correlation analysis (where r
is the correlation). All analyses were performed with SPSS 9.0.1 or
SigmaStat 2.03 (SPSS Science, Chicago, IL). p values <0.05
were taken to indicate significant differences in mean values.
Estimates of heritability (h2) were calculated
from the ANOVA values as h2 = SSB/SST, where
SSB equals the sum of squares between subjects and SST is the sum of squares total (Belknap,
1998
).
0.01 was used to identify significant
associations. Computer simulations suggest that only half the loci
detected using BXD RI strains with a significance level of
p < 0.01 represent true genetic associations (Belknap et al., 1996| |
Results |
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Initial sensitivity and AFT were measured in each of the 30 BXD RI
strains available and the parental strains (C57 and DBA mice). Both
initial sensitivity (BEC0) and AFT were
continuously and quantitatively distributed across strains. Initial
sensitivity differed significantly across strains (Fig.
1A, ANOVA p < 0.001). AFT also differed significantly across strains (Fig. 1B, ANOVA p < 0.001). Genotype accounted for 36% and 39% of
the total variance observed for initial sensitivity and AFT,
respectively (i.e., h2 = 0.36, 0.39). Times for
fall and regain of balance revealed significant differences between
strains (Table 1, ANOVA p < 0.01). Mean (±S.E.M.) time for fall from the dowel across strains
was 1.88 ± 0.007 min, and mean times for first regain and second
regain of balance on the dowel across strains were 18.96 ± 1.02 and 150.43 ± 2.34 min, respectively. There was a significant
correlation between time for loss of balance on the dowel and blood
ethanol concentration at fall from the dowel (initial sensitivity;
Table 2, r = 0.64, p < 0.01). Blood ethanol concentrations at regain of
balance (BEC1 and BEC2)
correlated significantly with times for regain of balance (regain 1 and
regain 2; see Table 2). There was no significant correlation between
initial sensitivity (BEC0) and AFT (Table 2).
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Prior to biochemical measures in the BXD RI mice, pilot studies were performed to determine whether behavioral testing would influence or alter biochemical measures in the same animals. Naive C57 and DBA mice were compared with littermates tested on the dowel test for ataxia as described under Materials and Methods. At 1 or 2 weeks after behavioral testing, whole-cell cAMP accumulation was measured in the cerebellum of the behaviorally tested mice as described under Materials and Methods, and the biochemical results were compared with those of naive controls. There was no significant difference in basal, forskolin-, or isoproterenol-stimulated cAMP accumulation in the cerebellum between naive controls and mice tested behaviorally 1 or 2 weeks before determination of cerebellar biochemistry in either the C57 or DBA strain of mice (data not shown).
Basal, forskolin (a direct activator of adenylyl cyclase)-, and
isoproterenol-stimulated cAMP accumulation in the cerebellum was
measured in the 30 BXD RI strains of mice and the C57 and DBA mice
(Fig. 2, A-C). Basal and stimulated cAMP
production was continuously and quantitatively distributed across
strains. ANOVA revealed significant differences in basal
(p < 0.002, Fig. 2A), forskolin (p < 0.001, Fig. 2B)-, and isoproterenol-stimulated (p < 0.001, Fig. 2C) cAMP accumulation in the cerebellum. Genotype accounted
for 24, 35, and 42% of the total observed variance for basal,
forskolin-, and isoproterenol-stimulated cAMP accumulation, respectively (h2 = 0.24, 0.35, 0.42).
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We identified a significant genetic correlation between initial
sensitivity to ethanol on the dowel test for ataxia and basal cAMP
accumulation in the cerebellum (r =
0.433,
p = 0.02, Table 3). This
negative correlation means that mice with high basal cAMP accumulation
(DBA allele) have an increased sensitivity to ethanol, or low
BEC0 (DBA allele). There were no significant
correlations between times for loss or regain of balance and basal or
stimulated cAMP accumulation measures (Table 3).
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Provisional QTLs for initial sensitivity and AFT on the dowel test for
ataxia and basal and stimulated cAMP production are presented in Table
4. Multiple provisional QTLs were
identified for both behavioral and biochemical measures. Since we
identified a genetic correlation between initial sensitivity to ethanol
on the dowel test for ataxia and basal cAMP accumulation in the
cerebellum, we would expect to find common QTLs for these two
phenotypes. Since we found no genetic correlation between initial
sensitivity and AFT, we would expect to find few, if any, QTLs in
common between these behavioral measures. Overlapping QTLs were
identified for initial sensitivity (BEC0) and
basal cAMP accumulation on chromosomes 1 and 8 (Table 4), which
suggests that they may share certain genetic codetermination.
Overlapping QTLs for basal and forskolin-stimulated cAMP accumulation
were also identified on chromosome 17 (Table 4), suggesting that a
common gene(s) may influence these biochemical phenotypes.
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As mentioned, we were particularly interested in identifying and
characterizing genes that were contained in overlapping QTLs for
initial sensitivity on the dowel test for ataxia and basal cAMP
accumulation in the cerebellum. We chose to examine Creb1 (Chr 1:31.0 cM) as a good candidate gene because it is a downstream effector of the cAMP signaling pathway. Total CREB levels were compared
using Western blot analysis between C57 and DBA mice, and no
significant differences were detected (Fig.
3, A and B). The coding region of the
Creb1 gene was sequenced to identify potential polymorphisms
between the two mouse strains. No differences were detected between C57
(AF448507) and DBA (AF448508) nucleotide sequences for the
Creb1 cDNA (data not shown). Additionally, we compared the
nucleotide sequences we obtained for the Creb1 cDNA to those
available in on-line databases from Celera Genomics (11/2001,
http://www.celera.com) and the Mouse Genome Sequencing Consortium
(11/2001, http://www.ncbi.nlm.nih.gov/genome/seq/MmHome.html) for the
DBA and C57 mouse strains, respectively. The Celera Genomics database
contains 91% of the coding region of the DBA Creb1 gene. The Mouse Genome Sequencing Consortium database contains 88% of the
coding region for the Creb1 gene. Upon comparison, we
detected no differences between our results for either strain and those reported by the two databases.
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Discussion |
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Previously, we identified a genetic correlation between initial
ataxic sensitivity to ethanol using the stationary dowel and cAMP
signaling in the mouse cerebellum using nine inbred strains of mice
(Kirstein and Tabakoff, 2001
). Phenotypic differences between inbred
strains of mice, assessed under similar environmental conditions, can
be interpreted as evidence of genetic influence on the phenotype
(McClearn, 1991
). A genetic correlation suggests that a common gene, or
genes, influences both phenotypic measures. However, genetic
correlations fail to identify the actual genes that influence the
variation in complex traits. QTL analysis allows for narrowing of the
location of genes that may influence the phenotype of interest. Given a
genetic correlation between phenotypic traits, one would predict that
there would be overlapping QTLs for these traits. One would also expect
that the gene(s) influencing both the genetically correlated traits
would be contained within the overlap of the QTL. There are several
advantages of utilizing the BXD RI strains compared with other RI
strains for QTL mapping. First, an elaborate chromosomal marker map
exists (http://www.informatics.jax.org; Blake et al., 2001
), and
additional markers have been typed in the BXD RI strain panel (Taylor
et al., 1999
), improving marker map density and the ability to detect
associations. Likewise, many investigators use the BXD RI panel of
mice, making it possible also to compare results across studies and
identify genetic correlations (for review see Wehner et al., 2001
).
Furthermore, additional strains have been added to the BXD RI panel
(Taylor et al., 1999
), which increases the power to detect associations
between complex traits and genetic markers.
We detected significant differences between strains in initial
sensitivity, defined as BEC0, on the dowel test
for ataxia (blood ethanol concentrations at the time a mouse was no
longer able to balance on a dowel) using the BXD RI panel of mice.
There are various behavioral tests of ethanol-induced ataxia. They
include the stationary dowel, the Rotarod, the screen test, and the
grid test involving measures of grip strength, balance, and coordinated movement (Gallaher et al., 1996
; Phillips et al., 1996
; Browman and
Crabbe, 2000
; Deitrich et al., 2000
; Gehle and Erwin, 2000
). Although
inbred strains of mice have been shown to differ on numerous measures
of ethanol sensitivity, no one strain has been shown to be more or less
sensitive across all tests of ethanol sensitivity (Crabbe, 1983
; Crabbe
et al., 1994
). Boehm et al. (2000)
demonstrated that
5-hydroxytryptamine-1B mutants differed from their wild-type littermates on only two of eight different measures of motor
incoordination. In other words, all of the "sensitivity" measures
are not genetically correlated to one another. We were unable to
identify any genetic correlation between our results of initial
sensitivity using the stationary dowel and the results of Gallaher et
al. (1996)
for initial sensitivity using the Rotarod. Crabbe et al.
(1996)
were also unable to find a genetic correlation between initial
sensitivity using the Rotarod and the grid test. The lack of genetic
correlation across such studies further points to the specificity of
genetic influences on behavioral tests of initial sensitivity to
ethanol-induced ataxia.
Gehle and Erwin (2000)
evaluated the LSxSS RI panel of mice using the
same behavioral test (the dowel test for ataxia) that we have employed
in our study to identify QTLs for initial sensitivity and AFT. The QTLs
for initial sensitivity identified by Gehle and Erwin (2000)
were
unlike those identified in our studies. One possible reason we did not
find overlapping QTLs between their study and our results may be
related to a difference in the composition of the genetic pool from
which the BXD RIs and the LSxSS RIs were derived. The LSxSS RI mice
were originally derived from a heterogeneous stock of eight inbred
strains (McClearn and Kakihana, 1981
). The DBA and C57 mice were two of
the progenitor strains for the LSxSS RI mice, but the effects of unique
alleles contributed by the other six inbred progenitor strains to the
LS and SS mice may explain the lack of overlap between QTLs identified
from the two studies. The heritabilities, which are attributed to a
specific population, for initial sensitivity using the dowel test for
ataxia were found to differ in the BXD RI mice and the LSxSS RI mice (our study and Gehle and Erwin, 2000
).
Interestingly, in our studies and two other studies using BXD RI mice,
overlapping QTLs were identified between initial sensitivity on the
dowel test and the screen test for ataxia on chromosome 1 (74.5 and
93.3 cM), chromosome 8 (13 cM), and chromosome 11 (26-32 cM) (Browman
and Crabbe, 2000
), and with initial sensitivity on the grid test on
chromosome 1 (93 cM) and chromosome 11 (35-40 cM) (Phillips et al.,
1996
). These findings suggest possible genetic codetermination for
certain forms of ataxia in the BXD RI mice.
When we examined our QTL results for AFT and those of Gallaher et al.
(1996)
, who also used BXD RI mice, we were unable to identify any
genetic correlation between our results for AFT using the stationary
dowel and the results of Gallaher et al. (1996)
for acute tolerance
(delta or fold-increase) using the Rotarod. This is not completely
unexpected because, as mentioned above, there is little evidence that
genetic correlations exist between measures of ethanol's behavioral
actions on a Rotarod and ethanol's behavioral actions measured by use
of a stationary dowel or a grid (current study, and Crabbe et al.,
1996
).
Deitrich et al. (2000)
and Gehle and Erwin (2000)
used the LSxSS RI
mice and the dowel test for ataxia to identify QTLs for AFT. When
comparing our results to those of Deitrich et al. (2000)
and Gehle and
Erwin (2000)
, we were only able to identify one common QTL between our
study and the study by Gehle and Erwin (2000)
for AFT. This region
occurred on chromosome 14 at 0.5 cM (in our study) and at 3 cM (in the
study of Gehle and Erwin, 2000
). Again, the lack of overlapping QTLs in
studies using BXD RIs versus the LSxSS RIs may be due to differences
between the BXD RI and the LSxSS RI mice in their gene pool and in the
genetic pathways used to arrive at AFT to ethanol.
Cyclic AMP signaling has been implicated in the ataxic effects of
ethanol (see above) and in the development of alcohol tolerance (for
review see Tabakoff and Hoffman, 1998
). Using BXD RI mice, we
identified a significant genetic correlation between initial sensitivity on the dowel test for ataxia and basal cAMP accumulation in
the cerebellum. We did not find a genetic correlation between AFT and
cAMP accumulation in the cerebellum. Our previous work also supports
the lack of a genetic relationship between cAMP accumulation and AFT.
High acute functional tolerance mice and low acute functional tolerance
mice, selectively bred for differences in AFT using the stationary
dowel (Erwin and Deitrich, 1996
), did not differ in cAMP accumulation
in the cerebellum (Kirstein and Tabakoff, 2001
).
In accord with the significant genetic correlation between initial
sensitivity using the dowel test and basal cAMP accumulation in the
cerebellum, we identified two overlapping QTLs for these measures. In
general, strains possessing the DBA allele were more sensitive to
ethanol-induced ataxia (i.e., the mice fell from the dowel at a lower
BEC) and had a higher basal cAMP accumulation measure. Conversely,
strains possessing the C57 allele were less sensitive to
ethanol-induced ataxia (i.e., the mice fell from the dowel at a higher
BEC) and had a lower basal cAMP accumulation measure. Our results, of
course, do not rule out the possibility that brain regions other than
the cerebellum may be involved, since the mice are mobile on the dowel,
actively moving along its length, and other pathways such as basal
ganglia might play a role in the incoordinating actions of ethanol
(Kirstein and Tabakoff, 2001
). Verification of our provisionally
identified QTLs in a genetically segregating population will also be
required to conclusively answer which of the QTLs represent true
genetic influences. It should be noted, however, that the actual level of significance for many of the QTLs identified in our studies (Table
4) was in the p < 0.001 to p < 0.005 range. Such data provide greater confidence in the association of the
provisional QTLs and the measured phenotypes. The provisional QTLs are
thus useful in generating hypotheses about candidate genes, as well as
in focusing future studies with other genetic models.
Genes were considered candidates within the context of our studies if
they mapped within ±10 cM of markers identifying a particular QTL.
Possible candidate genes that map near QTLs for initial sensitivity include the cAMP response element binding protein 1 (Creb1,
Chr 1:31.0 cM), glycine receptor
1 (Chr
11:30.0 cM), glutamate receptor ionotropic
-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid 1 (Chr 11:31.0
cM), acetylcholine receptor
(Chr 11:40.0 cM), acetylcholine
receptor
(Chr 11:42.0 cM), and the 5-hydroxytryptamine (serotonin)
transporter (Chr 11:42.0 cM) (www.informatics.jax.org; Blake et
al., 2001
). Candidate genes of interest that map near-provisional QTLs
for basal cAMP accumulation measures include adenylyl cyclase 1 (Chr
11:1.25 cM), cAMP response element binding protein 1 (Chr 1:31.0 cM),
adenylyl cyclase 7 (Chr 8:40 cM), and calcium/calmodulin-dependent protein kinase II-
(Chr 11:0.5 cM) (www.informatics.jax.org; Blake
et al., 2001
). Interestingly, the overlapping QTL for both initial
sensitivity and basal cAMP accumulation on chromosome 1 contained
Creb1 (Chr 1:31.0 cM) (http://www.informatics.jax.org; Cole
et al., 1992
; Blake et al., 2001
). CREB is a major transducer of cAMP
signals and through its transcriptional control function (Andrisani,
1999
; Shaywitz and Greenberg, 1999
) could influence basal gene
expression levels which, in turn, could impact an animal's response to
ethanol (Wand et al., 2001
).
To investigate the possibility that Creb1 may be the gene
influencing initial sensitivity and basal cAMP accumulation, we compared CREB levels and gene sequence (cDNA) between the parental strains (C57 and DBA). Differences in CREB expression levels could imply sequence differences in the promoter region of the gene. Identifying sequence differences in the coding region of the gene could
implicate allelic differences in CREB function. We, however, found no
differences in expression levels or coding sequence of Creb1. The Creb1 mRNA can be alternatively
spliced to produce several CREB isoforms (Ruppert et al., 1992
; Blendy
et al., 1996
). Since our methods did not include the sequencing of
intronic regions of the Creb1 gene, we cannot rule out the
possibility of differential alternative splicing in the C57 and DBA mice.
Many genes lie within the QTLs from which we chose
Creb1 as a candidate gene. There are at least 70 known genes
in the QTL interval on chromosome 1 reported on the Mouse Genome
Informatics web site (http://www.infomatics.jax.org; Blake et al.,
2001
), but there could be even more genes based on empirical estimates. With advances in genomic information for the mouse, one can search for
polymorphisms using on-line databases provided by Celera Genomics (http://www.celera.com) and the Mouse Genome Sequencing Consortium (http://www.ncbi.nlm.nih.gov/genome/seq/MmHome.html) to obtain mouse genomic sequence data for in silico comparative sequencing between strains. Our sequencing data for Creb1 were obtained
prior to access to the Celera Genomics database. Current comparison of
our sequence results with the database for DBA (http://www.celera.com) and C57 (http://www.ncbi.nlm.nih.gov/genome/seq/MmHome.html) mice indicated that no significant differences exist between our data and
the regions containing the coding regions of the Creb1 gene in the Celera Genomics or the Mouse Genome Sequencing Consortium databases.
Our results demonstrate a significant genetic influence on initial sensitivity (BEC0) and AFT using the dowel test for ataxia and also for basal, forskolin-, and isoproterenol-stimulated cAMP accumulation in the cerebellum. We were able to detect multiple provisional QTLs for both behavioral and biochemical phenotypes. The identification of a significant genetic correlation between initial sensitivity (BEC0) using the dowel test for ataxia and basal cAMP accumulation in the cerebellum was further supported by the detection of two overlapping QTLs for these measures. The identity of genes that contribute to behavioral and biochemical differences is currently being pursued through comparative sequencing and differential gene expression in our laboratories using on-line genomic sequence databases and gene expression array technology, respectively.
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Acknowledgments |
|---|
We thank Dr. Richard R. Radcliffe for comments on an earlier version of the manuscript.
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Footnotes |
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Accepted for publication February 15, 2002.
Received for publication December 13, 2001.
Supported by Grant AA09014-09 from the National Institute on Alcohol Abuse and Alcoholism, the Banbury Foundation, and Predoctoral Training Grant GM07635-21 from the National Institute on General Medical Sciences. Also supported by Grants AA11853 and AA03527 from the National Institute on Alcohol Abuse and Alcoholism to J.M.S.
Address correspondence to: Dr. Boris Tabakoff, Department of Pharmacology, 4200 East Ninth Avenue, Box C-236, Denver, CO 80262. E-mail: boris.tabakoff{at}uchsc.edu
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Abbreviations |
|---|
AFT, acute functional tolerance; ANOVA, analysis of variance; BEC, blood ethanol concentration; cM, centiMorgan; Chr, chromosome; LS, long sleep mice; SS, short sleep mice; KRB, Krebs-Ringer-bicarbonate; PCR, polymerase chain reaction; QTL, quantitative trait locus; RI, recombinant inbred.
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References |
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