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Vol. 302, Issue 2, 416-423, August 2002
Wadsworth Center, New York State Department of Health, and
School of Public Health, State University of New York at Albany,
Albany, New York
Human cytochrome P450 2A13 (CYP2A13), which is highly efficient
in the metabolic activation of a major tobacco-specific
carcinogen, 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone
(NNK), may play important roles in xenobiotic toxicity and
tobacco-related tumorigenesis in the respiratory tract. The aim of this
study was to identify any genetic polymorphisms of the
CYP2A13 gene, which may alter the metabolic capacities
of the enzyme. Polymerase chain reaction (PCR) single-strand
conformational polymorphism analysis was used to identify
single-nucleotide polymorphisms (SNPs) in all of the exons and at the
exon-intron boundaries, and PCR-restriction fragment length
polymorphism analysis and DNA sequencing were used to determine the
frequencies of the newly identified variant alleles in the four major
ethnic groups. Blood spot DNA from more than 100 individuals was used for these analyses. Seven variant alleles were
found, but only one SNP was detected in the coding region, in exon 5, leading to an Arg257Cys amino acid change. The frequencies of the
Arg257Cys allele in white, black, Hispanic, and Asian individuals are
1.9%, 14.4%, 5.8%, and 7.7%, respectively. Functional analysis of
the variant protein was performed following its heterologous expression. The Arg257Cys variant was 37 to 56% less active than the
wild-type Arg-257 protein toward all substrates tested. With NNK,
Cys-257 had higher Km and lower
Vmax values than did Arg-257, with a
>2-fold decrease in catalytic efficiency. The Arg257Cys mutation could
provide some protection against xenobiotic toxicity in the respiratory
tract to individuals who are homozygous for the Cys-257 allele.
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